{"id":6985,"date":"2025-11-07T09:26:11","date_gmt":"2025-11-07T00:26:11","guid":{"rendered":"https:\/\/www.infront.kyoto-u.ac.jp\/?p=6985"},"modified":"2025-11-07T09:42:49","modified_gmt":"2025-11-07T00:42:49","slug":"post-6978","status":"publish","type":"post","link":"https:\/\/www.infront.kyoto-u.ac.jp\/en\/post-6978\/","title":{"rendered":"DeepSpaceDB: a spatial transcriptomics atlas for interactive in-depth analysis of tissues and tissue microenvironments"},"content":{"rendered":"<p><strong>DeepSpaceDB: a spatial transcriptomics atlas for interactive in-depth analysis of tissues and tissue microenvironments<\/strong><\/p>\n<p><em>Nucleic Acids Research,<\/em> 2025 Oct 29 : gkaf1117.<br \/>\nhttps:\/\/doi.org\/10.1093\/nar\/gkaf1117<\/p>\n<p>Vladyslav Honcharuk<sup>1,2<\/sup>, Afeefa Zainab<sup>1<\/sup>, Yoshiya Horimoto<sup>3,4<\/sup>, Keiko Takemoto<sup>1<\/sup>, Diego Diez<sup>5<\/sup>, Shinpei Kawaoka<sup>1,6<\/sup>, Alexis Vandenbon*<sup>1,7,8<\/sup><\/p>\n<p>1 Institute for Life and Medical Sciences, Kyoto University<br \/>\n2 Department of Neuroscience, Graduate School of Medicine, Kyoto University<br \/>\n3 Department of Breast Surgery and Oncology, Tokyo Medical University Hospital<br \/>\n4 Department of Human Pathology, Juntendo University Faculty of Medicine<br \/>\n5 Immunology Frontier Research Center, Osaka University<br \/>\n6 Department of Integrative Bioanalytics, Institute of Development, Aging and Cancer (IDAC), Tohoku University<br \/>\n7 Institute for Liberal Arts and Sciences, Kyoto University<br \/>\n8 Department of Mammalian Regulatory Network, Graduate School of Biostudies, Kyoto University<\/p>\n<p>*Corresponding Author<\/p>\n","protected":false},"excerpt":{"rendered":"<p>DeepSpaceDB: a spatial transcriptomics atlas for interactive in-depth analysis of tissues and tissue microenvironments Nucleic Acids Research, 2025 Oct 29 : gkaf1117. https:\/\/doi.org\/10.1093\/nar\/gkaf1117 Vladyslav Honcharuk1,2, Afeefa Zainab1, Yoshiya Horimoto3,4, Keiko Takemoto1, Diego Diez5, Shinpei Kawaoka1,6, Alexis Vandenbon*1,7,8 1 Institute for Life and Medical Sciences, Kyoto University 2 Department of Neuroscience, Graduate School of Medicine, Kyoto [&hellip;]<\/p>\n","protected":false},"author":3,"featured_media":6980,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"_locale":"en_US","_original_post":"https:\/\/www.infront.kyoto-u.ac.jp\/?p=6978","footnotes":""},"categories":[1],"tags":[],"labo":[],"labo_en":[72],"class_list":["post-6985","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-achievements","labo_en-labo32","en-US"],"acf":[],"_links":{"self":[{"href":"https:\/\/www.infront.kyoto-u.ac.jp\/wp-json\/wp\/v2\/posts\/6985","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.infront.kyoto-u.ac.jp\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.infront.kyoto-u.ac.jp\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.infront.kyoto-u.ac.jp\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/www.infront.kyoto-u.ac.jp\/wp-json\/wp\/v2\/comments?post=6985"}],"version-history":[{"count":1,"href":"https:\/\/www.infront.kyoto-u.ac.jp\/wp-json\/wp\/v2\/posts\/6985\/revisions"}],"predecessor-version":[{"id":6987,"href":"https:\/\/www.infront.kyoto-u.ac.jp\/wp-json\/wp\/v2\/posts\/6985\/revisions\/6987"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.infront.kyoto-u.ac.jp\/wp-json\/wp\/v2\/media\/6980"}],"wp:attachment":[{"href":"https:\/\/www.infront.kyoto-u.ac.jp\/wp-json\/wp\/v2\/media?parent=6985"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.infront.kyoto-u.ac.jp\/wp-json\/wp\/v2\/categories?post=6985"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.infront.kyoto-u.ac.jp\/wp-json\/wp\/v2\/tags?post=6985"},{"taxonomy":"labo","embeddable":true,"href":"https:\/\/www.infront.kyoto-u.ac.jp\/wp-json\/wp\/v2\/labo?post=6985"},{"taxonomy":"labo_en","embeddable":true,"href":"https:\/\/www.infront.kyoto-u.ac.jp\/wp-json\/wp\/v2\/labo_en?post=6985"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}