塩見晃史，金子泰洸ポール，西川香里，土田新，新宅博文

ELASTomics：細胞の力学特性と遺伝子発現の統合解析法

生物物理，Vol.65, No.1 (2025), pp.17-19．

doi: 10.2142/biophys.65.17

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Hiroshi Kanno, Kotaro Hiramatsu, Hideharu Mikami, Atsushi Nakayashiki, Shota Yamashita, Arata Nagai, Kohki Okabe, Fan Li, Fei Yin, Keita Tominaga, Omer Faruk Bicer, Ryohei Noma, Bahareh Kiani, Olga Efa, Martin Büscher, Tetsuichi Wazawa, Masahiro Sonoshita, Hirofumi Shintaku, Takeharu Nagai, Sigurd Braun, Jessica P. Houston, Sherif Rashad, Kuniyasu Niizuma, and Keisuke Goda

High-Throughput Fluorescence Lifetime Imaging Flow Cytometry

Nature Communications, 15 (2024), 7376 (15 pages).

doi: 10.1038/s41467-024-51125-y

Hirofumi Shintaku; Kotaro Torii; Keiko Watanabe; Alissa Gordon; Masahiro Yo; Asako Sakaue-Sawano; Atsushi Miyawaki; Kaori Nishikawa; Asuka Takeishi

Live-organismal Transcriptomics

ResearchSquare, 09 Jul. 2024

doi: 10.21203/rs.3.rs-4555410/v1

*Akifumi Shiomi, Taikopaul Kaneko, Kaori Nishikawa, Arata Tsuchida, Takashi Isoshima, Mayuko Sato, Kiminori Toyooka, Kentaro Doi, Hidekazu Nishikii, and Hirofumi Shintaku

High-throughput Mechanical Phenotyping and Transcriptomics of Single Cells

Nature Communications, 15 (2024), 3812. (13 pages)

doi: 10.1038/s41467-024-48088-5

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Arata Tsuchida; Taikopaul Kaneko; Kaori Nishikawa; Mayu Kawasaki; Ryuji Yokokawa; Hirofumi Shintaku

Opto-combinatorial indexing enables high-content transcriptomics by linking cell images and transcriptomes

Lab on a chip, 16 Apr. 2024

doi: 10.1039/d3lc00866e

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Yuka Yokoyama, Yoshitaka Kameo, Junko Sunaga, Koichiro Maki, Taiji Adachi.

Chondrocyte Hypertrophy in the Growth Plate Promotes Stress Anisotropy Affecting Long Bone Development through Chondrocyte Column Formation.

Bone, Vol. 183, #117055.

doi: 10.1016/j.bone.2024.117055

Togo Hayashi, Hironori Takeda, Shunichi Ishida, Yohsuke Imai.

Folding of a growing hyperelastic sheet in a viscous fluid.

Physics of Fluids, Vol. 36, No. 5, 053315.

doi: 10.1063/5.0204021

Koki Yoshimoto, Koichiro Maki, Taiji Adachi, Ken-ichiro Kamei.

Cyclic Stretching Enhances Angiocrine Signals at Liver Bud Stage from Human Pluripotent Stem Cells in Two-Dimensional Culture.

Tissue Engineering Part A, Vol. 30, No. 9-10, pp. 426-439.

doi: 10.1089/ten.TEA.2023.0148

Shinsei Yambe, Yuki Yoshimoto, Kazutaka Ikeda, Koichiro Maki, Aki Takimoto, Akihide Tokuyama, Shinnosuke Higuchi, Xinyi Yu, Kenta Uchibe, Shigenori Miura, Hitomi Watanabe, Tetsushi Sakuma, Takashi Yamamoto, Kotaro Tanimoto, Gen Kondoh, Masataka Kasahara, Toshihide Mizoguchi, Denitsa Docheva, Taiji Adachi, Chisa Shukunami.

Sclerostin Modulates Mineralization Degree and Stiffness Profile in the Fibrocartilaginous Enthesis for Mechanical Tissue Integrity.

Frontiers in Cell and Developmental Biology, Vol. 12, 1360041.

doi: 10.3389/fcell.2024.1360041

Kosei Tomida, Jeonghyun Kim, Eijiro Maeda, Taiji Adachi, Takeo Matsumoto.

Spatiotemporal Analysis of Multi-scale Cell structure in Spheroid Culture Reveals Hypertrophic Chondrocyte Differentiation.

Cell and Tissue Research, Vol. 397, pp. 263-274.

doi: 10.1007/s00441-024-03905-7

Ryunosuke Suzuki, Yoshitaka Kameo, Taiji Adachi.

Modeling a Triclinic Lattice Elastic Body based on the Linear Couple Stress Theory.

International Journal of Solids and Structures, Vol. 302, #112923.

doi: 10.1016/j.ijsolstr.2024.112923.

Koichiro Maki, Jumpei Fukute, Taiji Adachi.

Super-resolution Imaging Reveals Nucleolar Encapsulation by Single-stranded DNA.

Journal of Cell Science, Vol. 137, No. 20, jcs262039.

doi: 10.1242/jcs.262039

Jorik Stoop, Yuka Yokoyama, Taiji Adachi.

Timing of Resting Zone Parathyroid Hormone-related Protein Expression Affects Maintenance of the Growth Plate during Secondary Ossification: A Computational Study.

Biomechanics and Modeling in Mechanobiology, Vol. 24, pp. 125-137.

doi: 10.1007/s10237-024-01899-3

Naotaka Nakazawa, Gianluca Grenci, Yoshitaka Kameo, Noriko Takeda, Tsuyoshi Sawada, Junko Kurisu, Zhejing Zhang, Kenichi Toma, Taiji Adachi, Keiko Nonomura, Mineko Kengaku.

PIEZO1-dependent Mode Switch of Neuronal Migration in Heterogenous Microenvironments in the Developing Brain.

Cell Reports, Vol. 44, No. 3, p. 115405.

doi: 10.1016/j.celrep.2025.115405

Xinyi Yu, Ryosuke Kawakami, Shinsei Yambe, Yuki Yoshimoto, Takako Sasaki, Shinnosuke Higuchi, Hitomi Watanabe, Haruhiko Akiyama, Shigenori Miura, Kadi Hu, Gen Kondoh, Ramu Sagasaki, Masafumi Inui, Taiji Adachi, Denitsa Docheva, Takeshi Imamura, Chisa Shukunami.

Dynamic Interactions between Cartilaginous and Tendinous/ligamentous Primordia during Musculoskeletal Integration.

Development, Vol. 152, No. 6, dev204512.

doi: 10.1242/dev.204512

Kazuhiro Shibusaka, Soichiro Negishi, Nobuhiro Sakai, Young Kwan Kim, Hiroyuki Okada, Fumiko Yano.

Synergistic Effects of Estrogen Deficiency and Articular Disk Derangement on Condylar Bone Loss.

Journal of Oral Biosciences, Vol. 67, No. 1, 100616.

doi: 10.1016/j.job.2025.100616

A Masui, R Hashimoto, Y Matsumura, T Yamamoto, M Nagao, T Noda, K Takayama, S Gotoh.

Micro-patterned culture of iPSC-derived alveolar and airway cells distinguishes SARS-CoV-2 variants.

Stem Cell Reports. 19(4):545-561. (2024)

doi: 10.1016/j.stemcr.2024.02.011.

Z Zhang, T Takenaga, SK Fehling, M Igarashi, T Hirokawa, Y Muramoto, K Yamauchi, C Onishi, M Nakano, S Urata, A Groseth, T Strecker, T Noda.

Hexestrol, an estrogen receptor agonist, inhibits Lassa virus entry.

Journal of Virology. 98(7):e0071424. (2024)

doi: 10.1128/jvi.00714-24

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M Sakai, Y Masuda, Y Tarumoto, N Aihara, Y Tsunoda, M Iwata, Y Kamiya, R Komorizono, T Noda, K Yusa, K Tomonaga, A Makino.

Genome-scale CRISPR-Cas9 screen identifies host factors as potential therapeutic targets for SARS-CoV-2 infection.

iScience. 27(8):110475. (2024)

doi: 10.1016/j.isci.2024.110475.

D Im, M Jormakka, N Juge, JI Kishikawa, T Kato, Y Sugita, T Noda, T Uemura, Y Shiimura, T Miyaji, H Asada, S Iwata.

Neurotransmitter recognition by human vesicular monoamine transporter 2.

Nature Communications. 15(1):7661. (2024)

doi: 10.1038/s41467-024-51960-z.